真菌生態學出版關于真菌生態學所有方面的研究報告，包括以下方面(不獨家):種群動態;適應;進化;在生態系統功能、營養循環、分解、碳分配中的作用;生態生理學;真菌-植物(病原體、菌根、地衣、內生菌)、真菌-無脊椎動物和真菌-微生物的相互作用;基因組學和(進化)遺傳學;保護和生物多樣性;遙感;生物修復和生物降解;定量和計算方面-建模，指標，復雜性，信息學。發表論文的先決條件通常是原創性、清晰性和與更好地理解真菌生態學相關的意義。

Fungal Ecology publishes investigations into all aspects of fungal ecology, including the following (not exclusive): population dynamics; adaptation; evolution; role in ecosystem functioning, nutrient cycling, decomposition, carbon allocation; ecophysiology; intra- and inter-specific mycelial interactions, fungus-plant (pathogens, mycorrhizas, lichens, endophytes), fungus-invertebrate and fungus-microbe interaction; genomics and (evolutionary) genetics; conservation and biodiversity; remote sensing; bioremediation and biodegradation; quantitative and computational aspects - modelling, indicators, complexity, informatics. The usual prerequisites for publication will be originality, clarity, and significance as relevant to a better understanding of the ecology of fungi.